rs48131853 SNP Detail

Summary

• ID
  rs48131853
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:142909505 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGAACCCAA CCCAGGTCCT
  CTGCAAGAGT CATAGTAAAT GGCTTCCAAC TGAAGCCATT TGTAATTTGA AACAGTATCC
  ATGGAAACAT AGGTAGGGAT CATACAGGTA ATCCAGGGTT GTGGGTACCT TGCTCCAGTA
  TGGAGATCTA GGACTTCTCC TGGGTTCCTG AGTACTGGGT GCGGCTGTGC TCACCTGGAT
  R
  AAATGAGGAG GCGCTGAGTC TAACCTTGAA ATGGGGAGTC ACTGAGTCTA ACCTGCTGTT
  GCAGTCTCTC GGCAGCTGGC CAGAGACTTT TGAGGGTTGT TAAGGGCTGG GGCTGGAGGC
  CAAGCCTGTC TTTCCAGCTA CAAGGAAGGC TGAGGCAGGA AGATCAAAAG TTCAAAGCTA
  CACAGTGAGT CCCCAGCCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60851175	NES16002621	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48131853					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60851175	NES16002621	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:142909505 () rs orientation: forward

Symbol	Name	Function Class
Rr624056	regulatory region 624056	900 bp distal
Rr624057	regulatory region 624057	within coordinates