rs48131384 SNP Detail

Summary

• ID
  rs48131384
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87020138 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATATTCCTG CTCGAATCTT
  TACCCCTAAC CCAACCTCAA CCCAACACTA ATTCATCGTA AACCAACCCT AGCAATCACC
  TTAACACCAA ATCTTAAGTA GAATATATTT GTCTTGAAGG CAACACATCT CAAGTCACCT
  TAGTGCCAAG AACAGCTTGA GTTACCAAAT GATATTTATT GAGTCAGTAA AGTCCTAAGC
  Y
  TTACCCTCAT TCTTACAAGC AACCCTAATA TGGAGTCTGA CCCTCCTTCC TGTCTCTGTG
  CCTTTACCAA GCACCAGCCA ATCCCAGATA CCAGCTCTTA TTGTTCCCTC TAATCTTACT
  TCAATTGAGT CCACCCCTTA TTTTTTTCTG CCCTCATACA CCTGGATGGA GACTCTAAAT
  TCACAGAGGT CATTGAACGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss135453798	ENSMUSSNP4061711	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48131384					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87020138 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm19382	predicted gene, 19382			611 bp upstream
Kirrel1	kirre like nephrin family adhesion molecule 1			Intron
				mRNA-UTR
Rr579439	regulatory region 579439			1970 bp proximal
Tssr33924	transcription start site region 33924			557 bp upstream
Tssr33925	transcription start site region 33925			386 bp upstream
Tssr33926	transcription start site region 33926			362 bp upstream