rs48125966 SNP Detail

Summary

• ID
  rs48125966
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116760436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTCCT TGGCTTTCTG AATAACTCTC
  M
  GCCGCCATCT ACTTGGACCA TGCCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60435460	NES15933245	PERLEGEN	MM_PANEL2	f	SNP	C	A	C	A	A	A	C	C	C	A		C	A	C	C		A
ss135676588	ENSMUSSNP646805	ENSEMBL	ENSEMBL_Sanger	f	SNP								C
ss320897075	CHEV_3_116669705	CHEVERUD	SCREENING_POP	f	SNP											C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48125966					SNP	C	A	C	A	A	A	C	C	C	A	C	C	A	C	C	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60435460	NES15933245	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116760436 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
4930455H04Rik	RIKEN cDNA 4930455H04 gene			1480 bp upstream
Cpgi13743	CpG island 13743			1806 bp proximal
Gm52613	predicted gene, 52613			407 bp upstream
Palmd	palmdelphin			Intron
				Noncoding-Transcript-Variant
Rr583814	regulatory region 583814			152 bp distal
Rr583815	regulatory region 583815			within coordinates
Rr583816	regulatory region 583816			within coordinates
Rr583817	regulatory region 583817			1390 bp proximal
Tssr35360	transcription start site region 35360			1751 bp downstream
Tssr35361	transcription start site region 35361			1776 bp downstream
Tssr35362	transcription start site region 35362			1841 bp downstream
Tssr35363	transcription start site region 35363			1889 bp downstream
Tssr35364	transcription start site region 35364			1925 bp downstream
Tssr35365	transcription start site region 35365			1985 bp downstream