rs48125054 SNP Detail

Summary

• ID
  rs48125054
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:102387631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTATTTCTC TCACCCTTCA
  GCCTTGGGAG CCAAATACCT GCTTTGATGA GGTCATCTCC TCACCACTGT GGGAGGCGGA
  TGTGGAGAAA ACAAAGAAAT CAGCTTTAAC CCTACAGGCT TGCTGTTCTC ATTGCTGCCC
  TCAGAGGTTC TGGCTGTCTC AGAGGGCTGG GTTAGTGGTT TGGCAGCAAG TGTCTACATA
  R
  GTAGACGTCT GGTCAGCTGG TTTTGTGATT GAAAAACCAT GGCTACCGCT GTTGCCAAAA
  TGCAGTGAGG AACATATTCA GCCAACTGCA GCTCACAGGG AGATTCAGTG ATTTTCTTCA
  TACCCCGAAT GTTGGTTTGG GGGAAAAAAA CAACCCAGCC CCTTAAATGC AAAACCCCTG
  AGTGGAGGAA AACATCTCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	LG/J	SM/J
ss147115608	ENSMUSSNP1712360	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss320438840	CHEV_2_102397443	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	LG/J	SM/J
rs48125054					SNP	A	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102387631 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Pamr1	peptidase domain containing associated with muscle regeneration 1			Intron
				Noncoding-Transcript-Variant
Rr561705	regulatory region 561705			1652 bp proximal