rs48124897 SNP Detail

Summary

• ID
  rs48124897
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:17463052 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGAGACCTTC CTTGTCTTTG
  CTCTGTGTGT AAGACGTGTC CCCTGCACCT GTATAGTGGC TGTGGCTTGA ATGACTCTCA
  AAGTTACTTC TATACATACC TCTATGTCCA TTATCGAATC AGCTCTTCTG ACAATTGGAA
  AGAACTCCTA TTCTAAAAGG CAATGGATTC CTTAGATCCT TTCACCTTAT TGTATCCTTG
  Y
  AGGGAAATGC AAAATTTTAG AAACGATTCT AATAAACGAA TCTTCCTAAG TAAATCCTTT
  TCAATTTCTT TTAATATTCG AGATTTGAAC TTATGTGTTG GATTTGTTAG TTGCTATTTG
  TCTATGTAAC CGCCTTGTGT CCATTTGTCT ATTTAATTAC CCTGTGTCCA GCTATGAGGA
  AAAAAAAGTG AAAATTAACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133014981	ENSMUSSNP458951	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48124897					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17463052 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17176	CpG island 17176	262 bp proximal
Met	met proto-oncogene	747 bp upstream
Rr626799	regulatory region 626799	257 bp proximal
Rr626800	regulatory region 626800	421 bp proximal
Rr626801	regulatory region 626801	464 bp proximal
Rr626802	regulatory region 626802	996 bp proximal
Tssr55050	transcription start site region 55050	379 bp upstream
Tssr55051	transcription start site region 55051	502 bp upstream
Tssr55052	transcription start site region 55052	696 bp upstream
Tssr55053	transcription start site region 55053	773 bp upstream
Tssr55054	transcription start site region 55054	832 bp upstream
Tssr55055	transcription start site region 55055	848 bp upstream
Tssr55056	transcription start site region 55056	874 bp upstream
Tssr55057	transcription start site region 55057	1039 bp upstream
Tssr55058	transcription start site region 55058	1079 bp upstream
Tssr55059	transcription start site region 55059	1118 bp upstream