rs48124521 SNP Detail

Summary

• ID
  rs48124521
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:87753824 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAACGGTTGT CAGCTTGAGG
  CCAGTCTGGG CAACATACCT AGCTTTTCTC TCAAGACATT AAAAGTGTAG AACAAAACCA
  AAAAAGTGTA GGTCCTCTGT GGGCAAAACG AAGGAAGAAA CAAAAAGCAA AGTGGATTGA
  TCTGAGTGAG CAAATTCAGA CTTCAACTTT CAGCTAAAAC ATTTGCTGGC CAAGCTGAGG
  W
  AGGTAGATTT ACAACATCAG AGTAAGTAGT CATACCAGGT CGCCCTGGAC AACGGATATG
  GGAATTTCAG TGTTACATTA GTCATTGTAA CTGGACTGAG CAAGCAAGAG GCTCAGGAGT
  TCAAGGTCAG CCACAGCAAC AAGCAGAGGC CAGACTAGAC TACGTGAAAT CCCAGTTTTG
  AAAAAGCTAG AGATGTTGCT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
ss60762270	NES16403486	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	A	A	T	A
SNP Consensus Information
SNP					Consensus Type	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	MOLF/EiJ	PWD/PhJ	WSB/EiJ
rs48124521					SNP	T	T	T	A	A	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60762270	NES16403486	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:87753824 () rs orientation: forward

Symbol	Name	Function Class
Rr371669	regulatory region 371669	250 bp upstream
Rr414853	regulatory region 414853	1124 bp distal
Rr414854	regulatory region 414854	1029 bp distal
Rr414855	regulatory region 414855	956 bp proximal
Rr414856	regulatory region 414856	1590 bp proximal
Rr414857	regulatory region 414857	1836 bp proximal
Sag	S-antigen, retina and pineal gland (arrestin)	Intron