rs48124097 SNP Detail

Summary

• ID
  rs48124097
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152048278 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGACATTCA ATCCCAGCCC
  AAGGGTCCCA GTGAGAGAGC AGCCGTGAGG ACACATACGG AGCAGATAAG GGGGCGGGGA
  CCTCAAACTG AAGGTCAAGG GCCTGTGGCT GGGAAGACGA TCCCTTGGGC AGAATAGCTC
  AGAACCTCCC CTGCCTGGGC TTACAGCTTG CTAATATACG TAATAAATAG GTCATTGTGT
  Y
  GATTATTTGG GAGTGAGAAC GGAGACAGAT AAGGCATCAT TCTTAAATTA CAGCCTACAG
  TGCCCAGAAA AGAAATCATG ATTCCTGTCC CACCCTGCCC CTAGTGTTAG GGGTAGACTC
  TAGGACTTCA CGCCAGGCAA GTTCTCTGCA ACTGGGTTAC ATCCCTTGCT CAATTGTAAG
  TGTTTATTTC ATTTTTTAAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss136102527	ENSMUSSNP4788781	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321028687	CHEV_3_152005605	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs48124097					SNP	C	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152048278 () rs orientation: forward

Symbol	Name	Function Class
Rr587532	regulatory region 587532	1744 bp distal
Rr587533	regulatory region 587533	316 bp proximal