rs48120706 SNP Detail

Summary

• ID
  rs48120706
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:145811639 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGATGAC TCTAGCTTGT
  GCCAAGTTGA CATAAAACTA TCCAGCACGC AAATAGAACC ACTTAAAACA ATGGTCTTGG
  ACGACAGAGA TACAATTGAT GCTTTGATTA GTATTTTATG CTTCTGACAT TTTTTGGGGG
  AAATTTCTAT TCAGTCTTTC TATCCCTCAC TCCTGCCACC GCTGCCCTAT GTGTACACAC
  W
  ACTTTTTGAC TTGACTTTTG GCCATCAAAC TCAGATGCTG TCATGGTTTG AATTTGCTTG
  GCACAAGGAG TGGCACTATT TGAAGGTGTG GCTTTGTTGG AGTAGGTGTG TCACTGTGGG
  CGTGGGCTTA AGACCCTGGC TTCCTGGAAG TCAGTCTTCC ACTAGCAGCC TTCAGATTCA
  AAGATGTAGA ACTCTCGGCC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61095961	NES16609938	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	T	T	T		A	A	A		T
ss136042042	ENSMUSSNP2082921	ENSEMBL	ENSEMBL_Sanger	f	SNP		A					T
ss321009515	CHEV_3_145768848	CHEVERUD	SCREENING_POP	f	SNP										T				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48120706					SNP	A	A	A	A	A	A	T	T	T	T	A	A	A	A	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61095961	NES16609938	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:145811639 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Dnai3	dynein axonemal intermediate chain 3			Intron
				Noncoding-Transcript-Variant
Rr586924	regulatory region 586924			1261 bp proximal