rs48120244 SNP Detail

Summary

• ID
  rs48120244
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:152592570 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGGTAGATC TAGTGTCTCT
  GCATGCCATA TGGGTTTGAA ATGGCTGGGA CCAAGGTCAC ACCCTGGCTA GATCTGGGAA
  GCAAGAGCTG ATTGTGGGGG TGGGAAGGGG GAGTTTCTTT TACTTTATCC CTGTAGGGGG
  CACAGTTCTT TTCTTAAAGT GCTGTCTCTA GACCAAGGCT GCTTTAAATC TTCTCACTGA
  Y
  GTGGGTAAAA TGAAACAGAA ATCAGAAAGG CCCAAAATGA CTCACAAGAC TTTCATGGGC
  TCCTTATAAA ACCCAAGGTC CCTGGGGACT TTCCATAAGC AAGTCAATTG TTTAAGGAAA
  AAGGAAAGGA AGAAAAACAG CAAGAATGAC TCTATCAATA CCCAAACAGG CCTTAGGTAA
  GAAAAGTTTA TATGGCCCTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss136104396	ENSMUSSNP4131980	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss321029042	CHEV_3_152549897	CHEVERUD	SCREENING_POP	f	SNP			C	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48120244					SNP	C	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152592570 () rs orientation: forward

Symbol	Name	Function Class
D3Mit322	DNA Segment, Chr 3, Massachusetts Institute of Technology 322	259 bp distal
Rr587620	regulatory region 587620	54 bp distal
St6galnac5	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 5	Intron