rs48117981 SNP Detail

Summary

• ID
  rs48117981
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:108429119 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGTCACCAC CTCCAAGCCC
  CCAGCCACCT TCACTGGCAC CCATAAAGTT GTTAATTGTT TTTCTTTGTT ACTGTTGGTC
  ACAAATCAAT TCTGTGCCTG TTTGATCTCC CAGTAGTTTT CGGCCAGGAT TCAGTTACAA
  CTTCCATTCA GCCAGGGAAT TGCTAGTCAA TAATATGTAT AGAGCAGCCT AGCACGGGTT
  R
  GAATGGGACA GAGAAACAAG TTCTCATCTT TGGAGCTCAT CCTCTCGGAC ACCTTGCTGT
  GCACCCTACC TGCCTTGACG GCATGATGCC AGAGTTGGAT GCTTTCCCCA TACAGCAGCA
  GGACAGCCCT TCCATAGCTA CCATGTCTTT CTTAGCATTA TTGTCAGTGA CACTTCCTAA
  GAGAAGCCTG GTCATCTTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss133502625	ENSMUSSNP2613224	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
ss321892725	CHEV_6_108402152	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48117981					SNP	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:108429119 () rs orientation: forward

Symbol	Name	Function Class
Gm35165	predicted gene, 35165	within coordinates
Itpr1	inositol 1,4,5-trisphosphate receptor 1	Intron
Rr636110	regulatory region 636110	1546 bp distal
Rr636111	regulatory region 636111	1485 bp proximal