rs48117944 SNP Detail

Summary

• ID
  rs48117944
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127647444 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAAGGCTTCT TGGTGTATTA
  AAAGGTTGCA TACGAGGAAC GGCAGTACGG CTGAGGCTAT GGATGGTGGC CATTACACCA
  GGAAAGCCTT GGGCTAGAGG AGCACCAGAG AGGCAGGACA CTTGACCTGG CTGCGCAGGG
  CCCAGAGCTG CAGGTCTAAT TAAGGCCTTT GATACATTGT GAATTGAGGT TTTGTACAGG
  W
  CGAAAGCTTA GTTCTGTTAC AAGCACTGGA ACTCCGTGCA GTGTTACCAG AAGCATGTGT
  TGAGGATGCT GTCCTTTTTC TTACTGCGTG TTTTTGACAC CTCTGTTAAA GATTAGGCTG
  CTGTAGCGAG GCAGCTGGTG GATACAGACT GCTATTCTCA ACGGGGTTCT TTTGCATTCC
  TGCCTCTTTT GTGATTGAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss135873140	ENSMUSSNP4505329	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	T
ss320957513	CHEV_3_127556713	CHEVERUD	SCREENING_POP	f	SNP				T	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48117944					SNP	A	A	T	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127647444 () rs orientation: forward

Symbol	Name	Function Class
Rr584883	regulatory region 584883	1785 bp distal
Rr584884	regulatory region 584884	496 bp distal
Rr584885	regulatory region 584885	within coordinates
Rr584886	regulatory region 584886	262 bp distal