rs48115286 SNP Detail

Summary

• ID
  rs48115286
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:135905737 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGAGAGACAG AGACAGAGGA
  ACAGGCAGGC AGGCAGACTT TAGATGCAAT CATTTCTCCT AAATTTTCAT AGGGAATCTT
  GAATCTTATT TTATGAAATT TGTATCTGAA TAGAACCATA ATGCATTATT GTATACTATC
  ATCTCTTGTG GGAAAAACTC AATTATACTT AAGTTTTTCT CTCCCAATTT CTCCAGGCTA
  K
  GGAGCACTGC TTGACTCTGG TTTGGGTCAC ATGCATCCCA CCATAAGGCT TGGCATTTGC
  TATGTCATTT CCTGTCTGGA AATCTTTCCT CTACCTACTG GCCTTCATGG CTTTCTCCTC
  TAAAGCTTAA GGGTGTGTAA ACGCTGTTAC TCAAGGATTA GTTCCCTCAA CTATCTACTC
  CAAAATAATA CCCACCTGAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61085145	NES16592812	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48115286					SNP	T	T	T	T	T	T	G	T	T	T	G	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61085145	NES16592812	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:135905737 () rs orientation: forward

Symbol	Name	Function Class
Bank1	B cell scaffold protein with ankyrin repeats 1	Intron
Gm66328	predicted gene, 66328	within coordinates
Rr585811	regulatory region 585811	424 bp distal