rs48113997 SNP Detail

Summary

• ID
  rs48113997
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:14953735 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATGC TTTCTTCTTT ATTTAGAAAA
  Y
  GGAGACCCAG TCCCATTTAG ACACA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss134618321	ENSMUSSNP5469518	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
ss320667963	CHEV_3_14888675	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48113997					SNP	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:14953735 () rs orientation: forward

Symbol	Name	Function Class
Car2	carbonic anhydrase 2	Intron
Cpgi12992	CpG island 12992	1461 bp distal
Rr573724	regulatory region 573724	1101 bp distal
Rr573726	regulatory region 573726	1485 bp distal
Rr573727	regulatory region 573727	1432 bp distal
Rr573728	regulatory region 573728	1250 bp distal
Rr573729	regulatory region 573729	within coordinates
Rr573730	regulatory region 573730	394 bp proximal
Tssr832	transcription start site region 832	1954 bp downstream
Tssr28466	transcription start site region 28466	1975 bp downstream
Tssr28467	transcription start site region 28467	1816 bp downstream
Tssr28468	transcription start site region 28468	1259 bp downstream