rs48112060 SNP Detail

Summary

• ID
  rs48112060
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136867888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGGAAGAA AGGGGACCAG
  GTGCAGCAGC CAGGAGGTCC AAGAGAGAGC AGTCGGTAGG ACCAAGTTGG ATTATATCGG
  GAAGGGCAGC TCGTCCCCTG AACTGGAGTG TAGGGTAGTG GGTGAGGTAT GCCAGCCATA
  CTGTCACAGG TGAGGGATAC AGGGAGGACC TGGGAGAGTC ACTGGTCCTC CCTGCTGCTC
  S
  CTGAACACAG TGAAAGATGT GCCCACGGGA ATAGAAGGTC CTGATGGTGT CCGACAGGTG
  GGGATGCCTT AACCTAAGCC ACAGAGAGGC TTCTCCATCC TCCCTCCCTG GGGGCTCACA
  GAAGAGGAAG TCATCAGGGA ACCAAGTTCC TGGACGTCCA GATGTTTCTT TGTAGCTCAG
  CTGCACCAAG CAAATGCCAC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147595834	ENSMUSSNP335315	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48112060					SNP	C	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136867888 () rs orientation: forward

Symbol	Name	Function Class
Gm31762	predicted gene, 31762	within coordinates
Rr602553	regulatory region 602553	1631 bp proximal
Rr602554	regulatory region 602554	1890 bp proximal