rs48112055 SNP Detail

Summary

• ID
  rs48112055
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:147952777 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      C CACTTCTCTT ACAACCCCAG CCCAGACTCC TCCAGCCGAA
  TCAGACCCCC CTATCCTTCC CAGCCCTGCC ACCCTACAGG CCCCTGGAGA CTTGGGTTTC
  R
  GAGCAGGCTG CAGGGGGCGA GCAGAGAAGA CCCCAGCATC TCACTCACGC GCACTCAGGC
  AGGGTGCACA CCGGGGCCTA GGCGCTTGCC CCTTCTCTAC C                    
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147985358	ENSMUSSNP4562433	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48112055					SNP	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147952777 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi15282	CpG island 15282			9 bp proximal
Fv1	Friend virus susceptibility 1			659 bp upstream
Miip	migration and invasion inhibitory protein			Intron
				Noncoding-Transcript-Variant
Rr398850	regulatory region 398850			272 bp upstream
Rr604509	regulatory region 604509			1152 bp distal
Rr604510	regulatory region 604510			within coordinates
Rr604511	regulatory region 604511			235 bp distal
Rr604512	regulatory region 604512			153 bp proximal
Tssr40232	transcription start site region 40232			467 bp upstream
Tssr40233	transcription start site region 40233			510 bp upstream
Tssr44551	transcription start site region 44551			149 bp downstream
Tssr44552	transcription start site region 44552			288 bp downstream
Tssr44553	transcription start site region 44553			311 bp downstream