rs48111084 SNP Detail

Summary

• ID
  rs48111084
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:136638407 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTTTC AAGACGCCTC CAGCCTTAGG
  R
  AGGTCCCCAC CGGCTCACAT TTTGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	SM/J
ss147585032	ENSMUSSNP1623962	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss321359219	CHEV_4_136467011	CHEVERUD	SCREENING_POP	f	SNP		G	A
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	SM/J
rs48111084					SNP	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:136638407 () rs orientation: forward

Symbol	Name	Function Class
Gm69228	predicted gene, 69228	within coordinates
Rr602496	regulatory region 602496	within coordinates
Rr602497	regulatory region 602497	298 bp proximal
Rr602498	regulatory region 602498	1861 bp proximal
Tssr39729	transcription start site region 39729	1246 bp downstream
Tssr39730	transcription start site region 39730	1238 bp downstream