rs48110017 SNP Detail

Summary

• ID
  rs48110017
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:7731586 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTTCTCTT TTCCAGGTGC
  CCCGTATGCA TACACATTTC TTTTTTTTTT TTTTTTAACA CTCTTTTTTC CCCGAGACAG
  GGTTTCTCTG TATATCTCCG GCTGTCCTGG AACTCATTTT GTAGACCAGG CTGGCCTCGA
  ACTCAGAAAT CCTCCTGCCT CTGCCTCCCA AGTGCTGGGA TTAAAGGCAT GCACCACCAC
  Y
  GCCCGGCTTG CATACACATT TCTAATATCA AGAACTGGAT ACAATGCTAC CACCAAAGAT
  ACCAAAGAAG CTACTAAGGG TGATCTGTGG CAGGCCAGGA AGGCTGGGAA GATCTGAGGA
  AAGGGAAGGA ACCCTGCATT CAGGATCTGA TTGAAGCCTG TCTCTCCTAC CAAACAGCAA
  GAATTCTAGT ACAGTTCCCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132954075	ENSMUSSNP1267659	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48110017					SNP	C	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:7731586 () rs orientation: forward

Symbol	Name	Function Class
Rr626314	regulatory region 626314	586 bp proximal
Rr626315	regulatory region 626315	1391 bp proximal
Rr626316	regulatory region 626316	1651 bp proximal