rs48109204 SNP Detail

Summary

• ID
  rs48109204
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:139423039 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGGCTTTGGA CATGGTTCCA
  TGGGCCTCCC TGGGGCTCAG ATTCTCTTCA AGGCTAATAT GAGTGAGCAA GGCTCAGGGC
  TCAGACTGAA GAGTGGAGGA GCCCAGAGTT GGCTTGAAGC CATGACTCCA GCTCCACCAG
  CAGGGGTGTC TTCTGGAAGG TGCTGAGGCA AGAGGGAGCA GCTATAGGGT AAAGAGCTCA
  Y
  TTAGTACCAG GAAGGGGGTG GGACAGAGGG TGCTACCATG CTGGTTCCCT TGGCTGTGAG
  ACGAGTCAGT TCTCTGTTGA GAAGGCAACA TTCATCAAGT GGGTGACCTT GGGGCCTCAA
  CTTGAACATC TCTCTTGGCT GAGAATATAA ATACCAATGT AGTCAAACTA AAAATGTCTT
  GAGGCTTAAA TTTAGTAATG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147678703	ENSMUSSNP5262870	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48109204					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:139423039 () rs orientation: forward

Symbol	Name	Function Class
Rr603286	regulatory region 603286	1975 bp proximal