rs48108402 SNP Detail

Summary

• ID
  rs48108402
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:152048921 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGTCTCC GCAGACAGCC
  ACCCACGGCA TCGAGTATTC AAATGCCAAA GGCTTATGGG ATATATCTTA CTCAAACGGC
  CACAATGTGT GTGTGTGTGT GTACACGTGT GTGTGTGTGC ATGTGCATGC GTGTGTGCCT
  GCTTGAATTT CTGTGTACCG CATGCGTGCA GGAACCTAAG GAGGCCAGAA AAGGGCATCA
  R
  ATCTCTTAGA CTTGGAATTA CAAGTGTTTG TGAGCCGCCA AGTGGCTGCT GGGAAACTAA
  CTCAGGTCCT CTACGGATTC TGGGAAACAC TCTCAGCTGC TCTTCAAGAG CATCAAGTGC
  TCTTAATGGT TGAGGCATTT CTCTGGCCCT TCCTAGCTTA TTTTAAAATT ATTATTATTA
  TTATTATTAA AATTGTGTGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss136102551	ENSMUSSNP2432500	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	A
ss321028693	CHEV_3_152006248	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48108402					SNP	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:152048921 () rs orientation: forward

Symbol	Name	Function Class
Rr587533	regulatory region 587533	within coordinates