rs48102232 SNP Detail

Summary

• ID
  rs48102232
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:97962252 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGTTGTAC TGTTAGTAAT
  ACAGATGTTT AGACATATTC TGCCCAACAC CCGTGGATGC ACACTCTGCA TTTAAGAGCA
  TCCCTCAATG GTTTGCTCAT GTGCAGCCTA GTGCATCTGC ATATTTAGTA ATCCAGGAGT
  GACAGGGGGA CAAATGAATA TCTCTTGATG GCAACAACTG AAACCAAGGT GCTAAAACTG
  Y
  CAAAATCAGA TCTCTTTAGT TGTTTGGATA TTCATTCAGA AGTTGTTTTT ATGTTAACAG
  CAGCAAAAGA CTCAACCCGG TGTTGCTGAG GAGTTTCCCT GACAGTCATC TCTTTAGGGG
  AGACCGGGAT CTTGGCTTTA TCCCCGAAAA TGAATTTCAG AATGAGTTAC TATGAAGCAA
  AGTTGGGGTT TGCAAAGAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss60914622	NES16221466	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48102232					SNP	C	C	C	C	C	C	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60914622	NES16221466	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:97962252 () rs orientation: forward

Symbol	Name	Function Class
Mitf	melanogenesis associated transcription factor	Intron
Rr635251	regulatory region 635251	1308 bp proximal