rs48101442 SNP Detail

Summary

• ID
  rs48101442
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:152497386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATATC CCTGGGAAGC CTGTTCTTTT
  T
  TGAAGGGAAA AGGAGTCGTC GAAGG                                      
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147970976	ENSMUSSNP1565339	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T
ss320562936	CHEV_2_152481202	CHEVERUD	SCREENING_POP	f	SNP			T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs48101442					SNP	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:152497386 () rs orientation: forward

Symbol	Name	Function Class
1700030C14Rik	RIKEN cDNA 1700030C14 gene	1136 bp upstream
Rr374088	regulatory region 374088	1491 bp downstream
Rr567410	regulatory region 567410	1895 bp distal
Rr567411	regulatory region 567411	1125 bp distal
Rr567412	regulatory region 567412	624 bp distal
Rr567413	regulatory region 567413	388 bp proximal
Rr567414	regulatory region 567414	1992 bp proximal
Tssr26849	transcription start site region 26849	1207 bp upstream
Tssr26850	transcription start site region 26850	1200 bp upstream
Tssr26851	transcription start site region 26851	1162 bp upstream
Tssr26852	transcription start site region 26852	1133 bp upstream