rs48100975 SNP Detail

Summary

• ID
  rs48100975
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:146799881 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGAACCA AGTTCTCCTT
  GTTTAAGTCA GCTGTGTGCC CTTGACATCT TAGCCTTGTG GGCCTGACTA CAGAAACTCT
  CTTCTTTTTC ACTCTGGGTA AGCTCAGGTC AAATGAGAGT TGAAGAGAGG TAAGGGGTTT
  CCAGAGCCAT CCCTCTGTGA TACATGGTGG AGGTGATACT TGTGAGATAC GGTTGGGTTG
  Y
  TTCTTCATCA TGCCTGGCAT CCTGTGTGCA CCTGCCTGGC ATCCCATGTC CTCCTGTTTG
  ACTAAAAGGA TGACTCATCT ATCTATCTAT CTATCTATCT ATCTATCTAT CTATCTATCT
  ATCTATCTAT CTGTCTGTCT GTCTGTTTTT GAGAAGAACT TCTCCAACTG CATATCTTTA
  GGGCTTTTTC CTAAATCTCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61096394	NES16600813	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48100975					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61096394	NES16600813	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146799881 () rs orientation: forward

Symbol	Name	Function Class
Gm29771	predicted gene, 29771	within coordinates
Gm65947	predicted gene, 65947	1643 bp downstream
Rr375880	regulatory region 375880	230 bp downstream
Rr587122	regulatory region 587122	1579 bp distal
Rr587123	regulatory region 587123	668 bp distal
Rr587124	regulatory region 587124	1351 bp distal