rs48096924 SNP Detail

Summary

• ID
  rs48096924
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:133940764 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCTGGAAAG ACCACCTTGA
  GTGTGCACAC CAGCACTCTT ACCAGCGTAT TCACTATCCA CAACCTACAC ACGAGCAAAT
  CTTGACAATG TCAATGTAAA TCTTTTGAAA ATTAAAATAT AAAATAGTTT AAGCTGCCTT
  TTAGCATTCT GTTCTCACAA AACAAATAAC TCACCTTTTT CTTCCCTCTC TGAAACCACA
  Y
  TACTATATTA CTCCACAAGA TGCTTTTTGT TTCTACGTGT AACTTTATTC TATTTTTAAA
  CAAGCATAGT CTGATTTTGT TTGCTTTTAG AAGACTCATT CAGAGTCACA TATTGTGGTA
  CAGGTCTAGA ACCCCAGCAC TGGGGAGTCT GAGCCAGGAT GACTGCCAAG AAGGGAACCA
  GGCTAGCCTG AGCTGTATAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss61082845	NES16585167	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs48096924					SNP	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61082845	NES16585167	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:133940764 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13850	CpG island 13850	923 bp proximal
Cxxc4	CXXC finger 4	mRNA-UTR
Rr585624	regulatory region 585624	998 bp proximal
Rr585625	regulatory region 585625	1499 bp proximal
Tssr31786	transcription start site region 31786	1328 bp upstream
Tssr31787	transcription start site region 31787	1480 bp upstream
Tssr31788	transcription start site region 31788	1530 bp upstream
Tssr31789	transcription start site region 31789	1582 bp upstream