rs48096758 SNP Detail

Summary

• ID
  rs48096758
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:153298617 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACTGTGC TGGGTTAAGA
  GCCCTGGCTG CTCTCCCTGA GCATATGGGT TGATTCCCAT CATGCACAGA GCAATCCACC
  CATAATTTTC ATTCCAGGGG GCTCAATGCC TTCTCCTGAC CTCCTCAAGA ACCAGGTACA
  CACGCAGGAC ACAGACAGGC GTGCTGCACA GACGCACGCC CGCGCAGGGG AAGCACCCAT
  R
  CACACAAAAT AGATATAAAT AAATCTCTCT TTAATGGAGA ACCTGAAGCA AGGCGCTGAC
  GTATTCCTTT TATCTGTCAG CAGGGATCTT CTCAACTGCA GCTCTAAGAA AGAAACTGCA
  GCCTTCGCTG ACATCTGGGG ACAGCATGTT TACTCACCTG ACAATCACAA TCACAAATGT
  GCATCTGGAC AGTGACATTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

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SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136109409	ENSMUSSNP37519	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48096758					SNP	G	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:153298617 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm32721	predicted gene, 32721			within coordinates
Rr587708	regulatory region 587708			1773 bp proximal
St6galnac3	ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 3			Intron
				Noncoding-Transcript-Variant