rs48095166 SNP Detail

Summary

• ID
  rs48095166
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:9115399 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTCTCCTTT GGAGTCCCTG
  ACTTCCCAAT ATGCAGAAGC ACAGGTGGGT CCTCTCATGG CTGAGAGACC AACAAGAGAG
  GGAAAGGGGC TCGAATCCCC AGTGAGCAGA GGTCCACAGC TCCACTCTTA CAAGTTCTAC
  CACCTTCCAG TAGTGCCACC GGCTGAGGGA CAGGCTCCAG TGACCCTTTC CAGGTTCCAG
  Y
  ATCTGATAGT ATCTAGCTCT AGTAGGACTG AATCAAGTTT CAGAGATGAC CCAGGTAAAG
  GGAGATAATT TGAGTTTGTC CTCTTAATCT ATGTGTCCTC CTAAGGACGG ATCAGAGGAA
  GGCAGAAAGA CTGTGGGAAA GAATACAGGG ACTCTGTCAT AAGTTCCTGT CACTCAAAAC
  CACTCACATG CCGCACATCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	MSM/Ms
ss145985369	ENSMUSSNP237395	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	MSM/Ms
rs48095166					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:9115399 () rs orientation: forward

Symbol	Name	Function Class
Gm54233	predicted gene, 54233	within coordinates
Rr588667	regulatory region 588667	456 bp proximal
Rr588668	regulatory region 588668	1702 bp proximal