rs48092567 SNP Detail

Summary

• ID
  rs48092567
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:18438574 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAGTGGTCCA CAAGGGGTTT
  CATGGTTTAT AGAAGTTAAA GTGTATTTAG CTGTTTTGAG ATAAAGAGCA TTTTATCTTT
  TCTAGATGCT AAAAACAAAC ATGGGAAGGA ACTTCCTGCA TTTTGTATTC ACAGCTATAG
  TGTGATTTTA CCAATTGAAG ATCTGTGGCA ATCCTGCATC AAGCAACATT ATTAAGGAAA
  W
  CATTTCTTCC TCCCCCAGTA GCTCCAATAA TAACAATTTC AAGTTGTAGA CAGTCTTTTT
  TTAGACACAA TACAACTTAT AAGACTAGAG TGCATCATAA AAAGACTTGC ATTCATTGCA
  AAATCAAAAG ACTTCTGTTA CTTCAGTATT GTCTATAGTT TAGTGGTTTA GACACAAACT
  TTCATCGTAT TCTCAATAAA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133034823	ENSMUSSNP5025349	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48092567					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18438574 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cttnbp2	cortactin binding protein 2			Intron
				Noncoding-Transcript-Variant
Gm40356	predicted gene, 40356			within coordinates
Rr626924	regulatory region 626924			1862 bp distal