rs48088678 SNP Detail

Summary

• ID
  rs48088678
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:17978696 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGCCT GGAATTAAAG TGCTGGGATT
  M
  AAGATGTGCC CCACCATCCT CAGCC                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148438438	ENSMUSSNP3024152	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	C
ss322114469	CHEV_7_18830120	CHEVERUD	SCREENING_POP	f	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48088678					SNP	A	A	C	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:17978696 () rs orientation: forward

Symbol	Name	Function Class
Mill1	MHC I like leukocyte 1	576 bp upstream
Rr642879	regulatory region 642879	603 bp distal
Tssr64734	transcription start site region 64734	431 bp upstream
Tssr64735	transcription start site region 64735	464 bp upstream
Tssr64736	transcription start site region 64736	614 bp upstream