rs48086934 SNP Detail

Summary

• ID
  rs48086934
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:101005174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGA GCAAAGCAGC ACACCTGCCT
  Y
  CTTAGCCTTT CTGCCGAAGC TCCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135544303	ENSMUSSNP2134867	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320850905	CHEV_3_100901781	CHEVERUD	SCREENING_POP	f	SNP			T	C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48086934					SNP	T	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:101005174 () rs orientation: forward

Symbol	Name	Function Class
Ptgfrn	prostaglandin F2 receptor negative regulator	Intron
Rr581955	regulatory region 581955	1526 bp distal
Rr581956	regulatory region 581956	342 bp distal
Rr581957	regulatory region 581957	239 bp proximal
Rr581958	regulatory region 581958	423 bp proximal
Rr581959	regulatory region 581959	1843 bp proximal
Tssr34769	transcription start site region 34769	788 bp upstream