rs48086658 SNP Detail

Summary

• ID
  rs48086658
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:102633839 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAATA AAAACAAAGT GATGTAGGAG
  Y
  TCAAAGAATG TTTTCTGTCC CAGGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147124458	ENSMUSSNP2847098	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48086658					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:102633839 () rs orientation: forward

Symbol	Name	Function Class
Rr561739	regulatory region 561739	461 bp proximal
Rr561740	regulatory region 561740	554 bp proximal
Rr561741	regulatory region 561741	647 bp proximal
Rr561742	regulatory region 561742	745 bp proximal
Rr561743	regulatory region 561743	1900 bp proximal