rs48085736 SNP Detail

Summary

• ID
  rs48085736
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:101869634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCCACACC CCACTAGGCT
  AGGGCTTGAC CACATGACTT GGCTTAGCCA AAGCATCTGT GGAATATGGT ATGAGCAGAA
  AGTTAAGACA TTCTTGAGCC AGCGTGCATA CCTATCACTC TCCAAAGATG GACAGTGATA
  CAGCGTGGAG GCAATGGAGG TAGGACAGAG CTGAGCCCGG TTTACAGACT GGAGCTACTT
  S
  TGGCAGAAAG GAGCCCTGCT ACAGACTGGG TGCAACAGGC TGATAAAACA TATACTAACA
  CCCATTGGGG CTAGGAGTCC TAGGTCCTGC GTTCTATTCC CAGCAACCCC TCCCTTACTC
  AAAAGAGTAA AGAAAACAGA AAGGGGAAGC AAGTGCCTAG TGGTATGTGC TGCATATGGC
  CTGCCTGCCT GCCTGCCTGC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147097838	ENSMUSSNP2287636	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48085736					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101869634 () rs orientation: forward

Symbol	Name	Function Class
Ldlrad3	low density lipoprotein receptor class A domain containing 3	Intron
Rr367252	regulatory region 367252	123 bp upstream
Rr561615	regulatory region 561615	1640 bp distal
Rr561617	regulatory region 561617	331 bp distal
Rr561618	regulatory region 561618	within coordinates
Rr561619	regulatory region 561619	351 bp proximal
Tssr19089	transcription start site region 19089	306 bp upstream
Tssr19090	transcription start site region 19090	327 bp upstream
Tssr19091	transcription start site region 19091	357 bp upstream