rs48085419 SNP Detail

Summary

• ID
  rs48085419
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:144114437 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TTTGGAGAGG TGGAAAGAGC GGATGGTTCT GGAGCTGGGA
  GAAGACGGGT TTGCAGAATA TACTTCAAGT AATTATCTTG CTTCTGGTTA TGTGTGGTCA
  Y
  TGGTTTTTAG GAGATAGAGC ATTCCTGTCA GAAGAATGGA GCTTAAAAAA AAATCTTACT
  GAGGAAGTAC TTTCAAATAG CATTTCATGT CTGCTAATT                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147789079	ENSMUSSNP6267743	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48085419					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144114437 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12351	CpG island 12351	1152 bp distal
Mgme1	mitochondrial genome maintenance exonuclease 1	Intron
Rr373996	regulatory region 373996	1608 bp upstream
Rr397362	regulatory region 397362	1465 bp downstream
Rr397363	regulatory region 397363	800 bp downstream
Rr566425	regulatory region 566425	1956 bp distal
Rr566426	regulatory region 566426	1566 bp distal
Rr566427	regulatory region 566427	869 bp distal
Snx5	sorting nexin 5	1724 bp upstream
Tssr20524	transcription start site region 20524	1926 bp downstream
Tssr20525	transcription start site region 20525	1845 bp downstream
Tssr20526	transcription start site region 20526	1568 bp downstream
Tssr20527	transcription start site region 20527	1462 bp downstream
Tssr20528	transcription start site region 20528	884 bp downstream
Tssr26596	transcription start site region 26596	1984 bp upstream
Tssr26597	transcription start site region 26597	1717 bp upstream
Tssr26598	transcription start site region 26598	1670 bp upstream
Tssr26599	transcription start site region 26599	1654 bp upstream