rs48083890 SNP Detail

Summary

• ID
  rs48083890
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:144114558 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        ATTCCTGTCA GAAGAATGGA GCTTAAAAAA AAATCTTACT
  GAGGAAGTAC TTTCAAATAG CATTTCATGT CTGCTAATTT GCTTAATCTT CGTAGATACT
  W
  TTAACTGTAG TTCACACTTA AAGAAATGGA AATAACAGAG ATCAAATTAT TTGACAAACT
  TGCATAATTT ATAAACAACC TATCAATTCT TTTCCATCT                       
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147789087	ENSMUSSNP1490615	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48083890					SNP	T	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:144114558 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12351	CpG island 12351	1273 bp distal
Mgme1	mitochondrial genome maintenance exonuclease 1	Intron
Rr373996	regulatory region 373996	1487 bp upstream
Rr397362	regulatory region 397362	1586 bp downstream
Rr397363	regulatory region 397363	921 bp downstream
Rr566426	regulatory region 566426	1687 bp distal
Rr566427	regulatory region 566427	990 bp distal
Snx5	sorting nexin 5	1845 bp upstream
Tssr20525	transcription start site region 20525	1966 bp downstream
Tssr20526	transcription start site region 20526	1689 bp downstream
Tssr20527	transcription start site region 20527	1583 bp downstream
Tssr20528	transcription start site region 20528	1005 bp downstream
Tssr26597	transcription start site region 26597	1838 bp upstream
Tssr26598	transcription start site region 26598	1791 bp upstream
Tssr26599	transcription start site region 26599	1775 bp upstream