rs48082867 SNP Detail

Summary

• ID
  rs48082867
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:154095745 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGTACCTT GAAGACAAAC
  CTGGGGACGG GGGCGCTCTG GAGCCCTTTA TCTTTTTTTC CCCCTTGTTC CAGTATACCA
  TATTAATTAA ATCTTTCTTG TTGCCTGTTT TATTATTTTT TAAATATGGT CTCAGTCGCC
  CAGGTTGACC TCAAACTTGC TATAAAGTCA AGCTCCTTTG TTTGTGTTTT GTTTTGTTTT
  R
  TTTTTCGAGA CAGGGCTTCT CAGTATAGCC CTGGCTGTCC TGGAACTCAC TCTGTAGACC
  AGGCTGGCCT CAGAAATCCA CTTGCCTCTG CCTCCCAAGT GCTGGGATTA AAGGCACCAC
  TGCCCGGCTA GTGAATTCCT TCCTTAACCT TAACCCTCGA CCAGCTGAGC GCTTGGGATG
  ACAGGTGTGT GCACCACCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148097218	ENSMUSSNP147681	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48082867					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:154095745 () rs orientation: forward

Symbol	Name	Function Class
Lrrc47	leucine rich repeat containing 47	515 bp upstream
Rr606051	regulatory region 606051	within coordinates
Tssr40571	transcription start site region 40571	483 bp upstream
Tssr40572	transcription start site region 40572	993 bp upstream