rs48080919 SNP Detail

Summary

• ID
  rs48080919
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147897980 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGCC TGACATCAGC ACACAAGCAC
  A
  TGCTCCCAGC TGCAACCCAA ACAAA                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss147983205	ENSMUSSNP6905568	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss321414950	CHEV_4_147187632	CHEVERUD	SCREENING_POP	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs48080919					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147897980 () rs orientation: forward

Symbol	Name	Function Class
Rr367778	regulatory region 367778	16 bp downstream
Rr398847	regulatory region 398847	1665 bp downstream
Rr398848	regulatory region 398848	982 bp upstream
Rr604504	regulatory region 604504	1081 bp proximal
Rr604505	regulatory region 604505	1227 bp proximal
Tssr44549	transcription start site region 44549	1148 bp downstream