rs48079510 SNP Detail

Summary

• ID
  rs48079510
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:142979707 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTCCTGACT CGCTTTCTCT
  TGAGTGCTGG GATTAAAGGC ACGCACCACC ACGCCCGGCT ATGCTTCAAC TCTTAAACCC
  AAACTTTAGC TTAAGGTCCA GTCCCTTAAA CTCTTGTTCT TTCTGCCCCT GCATCTCTAG
  TTTTGGACTT CGTGTCTCAC AATACTCAGT TCTGTGTTTC ATTTGTCCAT TTATCCCCTC
  Y
  GACAGTTTTC CACACTAACT CCTTATCTTA GCTACTGTGA ACAGAGTTTG CAATAAACCT
  GGGGCTACAA ACTTCTCTTC CCATAACAAG TTAATATTCT TTGGAGGTTG TCTGAGGCAC
  TGTTCCATTG CTGTGAGGAG ACACCATCAC CATCGTTTAC TTGGGGCTGG CTTACAGGTT
  CAGAGGATTA GTCCATTATC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss147777532	ENSMUSSNP2911013	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48079510					SNP	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:142979707 () rs orientation: forward

Symbol	Name	Function Class
Rr604179	regulatory region 604179	616 bp distal