rs48078901 SNP Detail

Summary

• ID
  rs48078901
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:101295187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATTTAGGGG AAGTGGGACG
  GGAGTGCTAT AGAGTGGACA CAGACAACGC AGCTGGAAGT GGCCTCCCTA ATTGACAGCT
  TCCCACATTA TGACAGGTTT GAGACTGACT GTGGTGGCAG AGTGGAACAC ACAGGGGCAG
  AGCAGCAGAC AGCGTTTTCT CAAATGGAAG CTTCCAGGTG TAGCCTCTGC CCTTAACCTA
  R
  AGGTTTGTAG TCTTTCCCGG GGACTCCCGG GGACATAGAT CATTGTCAGC TTGGTCGCTG
  AGTCCTGCTC TATACAGAAA CCTGAAAAAA AGGAAAAGCC AGTGAGAGGC CAGCAGTCAA
  GGGGAGCAGA CAGCAGGGCT GGGGGTTGAG GGCAGATTAT GGCTTCTGTT CTAAGGCTGC
  ATGGACTTTG GCAAGTGTTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss147073782	ENSMUSSNP5504986	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G
ss320428375	CHEV_2_101304999	CHEVERUD	SCREENING_POP	f	SNP			A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs48078901					SNP	G	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:101295187 () rs orientation: forward

Symbol	Name	Function Class
Rr561501	regulatory region 561501	18 bp distal