rs48077502 SNP Detail

Summary

• ID
  rs48077502
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126455929 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAAGAAGACC AATAGAGATA
  GCCCATCATG CTTTTGGTCT TGTGGTAACC CATTTATTCC TCTGAGGTTT CAATCACTCT
  CATGAGATGT GGTGTCTCTG GTGACTGAAC ACCTCCCACT GGGTCTCATC TTTTAAGAGG
  TTCTAGTACT GTTCAGTGTT GCTGTTGTAG TCCAAGCATA GGAACCTTTG GGGATATGAA
  Y
  CACGTCCAAC CCATAGCATC CTGTAAAACA TCTTCTTTTA TAGTGTAAAC AAGGAAAAGA
  AAGGGCTGAC CTAATTCATG TGGTCCTGTA ACCCATGCTT TGATTTGCTT TGTTTTGTTT
  TGTCTTTTGA GAGACAGGGT CTTAGTATAT AGCCCTGACT GGCCTGAGAC TTAATATGTA
  GATATAGATA TTATTAGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135838326	ENSMUSSNP2563262	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320947088	CHEV_3_126365198	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs48077502					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126455929 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Gm43005	predicted gene 43005			99 bp upstream
Rr397996	regulatory region 397996			65 bp downstream
Rr584671	regulatory region 584671			688 bp distal
Rr584672	regulatory region 584672			within coordinates
Rr584673	regulatory region 584673			975 bp proximal