rs48075504 SNP Detail

Summary

• ID
  rs48075504
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:33970088 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCATGTTGA AGCAGTGATG
  CTTCGTGTCC TGGAGAAGGT CAGCACTCCA TTCAGAAAAT GGCGTAAGCA TCACAAATAT
  CTGAACTAGA TGCCAAGGCT CCACTAAAAG CCAGCTTAGC CATTTGTCTC ACTATGTCAG
  GTGAAGAGAT GAACGAAGAC AAGAAGCAAT ATGGGCACAT TGAGGAAAGA ACCAATTCCA
  R
  CACTCCAGTG ACCCCTCCAC GTCTTCTGGG TACTGAGCCG AGGCTTAGGC TGAAACACAG
  GGAAGAGGAG TGCATAACCA AGTCGTCCTG GTCAAGGCAT TGTCCTGCCC GTCGTTGACC
  CGACATTGTT TCAACTCCCC TCTGTACTGC GCGGCAGTCC AGTGCGTTGC TACCCCAACT
  GTGGCCCACT GAATCTTTGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss133109691	ENSMUSSNP5410836	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48075504					SNP	G	G	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:33970088 () rs orientation: forward

Symbol	Name	Function Class
Gm13853	predicted gene 13853	736 bp upstream
Gm67665	predicted gene, 67665	within coordinates
Rr628235	regulatory region 628235	981 bp distal
Rr628236	regulatory region 628236	252 bp distal
Tssr60221	transcription start site region 60221	944 bp upstream
Tssr60222	transcription start site region 60222	777 bp upstream
Tssr60223	transcription start site region 60223	733 bp upstream