rs48073536 SNP Detail

Summary

• ID
  rs48073536
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:165468624 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTCCGAGCC CAGGAGCAGT
  GTTGGTGTGA AGGAACTGCC TGAGCAGAGG CCTAAAGGCA GTTTGTTGTG CATTGGAAGG
  AGAGAGGCCA CCAGGGCTAA GAGGGACACA GAGGTGGCCA ACACTGGTGT CCAGAGCACG
  GCCAAATTCA CACCAAGTGC TGGATAGGAA GTGGATCAGA GGGAAAGGGC TGCCTGGTGT
  K
  TTTGAATGTA TTCGTTCAAA TGACACATGC TGACCCTGTA GCATAATGAC AGGAGAGAAC
  GCTGGAGGTG TGGCATTGTA GAGGCAGTGC GGGGCGGGGG GCAGGGAAGA GGATGGGAGC
  CCAGTCCAGG CGGGAGAGGA CCAGGCTTGG CTGAGTGGGA GCACCTTGCC GCTCATGGTT
  ATGCTCAAAG CCCATCCTCT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148241875	ENSMUSSNP4946054	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G	G
ss320608506	CHEV_2_165452204	CHEVERUD	SCREENING_POP	f	SNP				G	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48073536					SNP	T	G	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:165468624 () rs orientation: forward

Symbol	Name	Function Class
Eya2	EYA transcriptional coactivator and phosphatase 2	Intron
Rr569965	regulatory region 569965	181 bp proximal
Rr569966	regulatory region 569966	1244 bp proximal
Rr569967	regulatory region 569967	1358 bp proximal