rs48071945 SNP Detail

Summary

• ID
  rs48071945
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:5153676 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTATTAGGT AAAATTTAAA
  ACACATAGAC AGAAACACAC ACACACACAC ACACACACAC ACAGAGGACT CCTTTCTTAG
  CATGTTTAGA GTGATTAGTC CTCAATATGG GTTCCTGCTA CCTTGAAGAA TTCACCTGCT
  ACCTGTACAA GATGAAGGTA TAATGACTCC TTCAAAAAAA TCAGGAAGGT GTTATTTAAA
  R
  GTTTTCGAAT ACTTATAATT CTAACCAGCG GAGATAGGTA AATACTGTCA TCAGTAGAAC
  TGTAAGCATT TCAAATATGT GTCTGACTTG TGGCCATAAG TTTGAAACTC CAGAGCCAAA
  GGCTTTGGTA ATTTAATTTC TTTCCAGAAA ATGTGATGAG TTCACGAAAA TGTGGGGAAA
  AGAGCTGGAC AAAATGAGAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60366981	NES15869421	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	G	G	A	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48071945					SNP	A	A	A	A	A	A	G	A	A	G	G	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60366981	NES15869421	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:5153676 () rs orientation: forward

Symbol	Name	Function Class
D3Mit61	DNA segment, Chr 3, Massachusetts Institute of Technology 61	117 bp distal
Gm17308	predicted gene, 17308	1660 bp upstream
Rr573165	regulatory region 573165	195 bp proximal
Rr573166	regulatory region 573166	1086 bp proximal
Rr573167	regulatory region 573167	1345 bp proximal
Rr573168	regulatory region 573168	1671 bp proximal
Tssr28264	transcription start site region 28264	1652 bp upstream