rs48071480 SNP Detail

Summary

• ID
  rs48071480
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:89324800 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGACA GTAAACTGTA TCTCAGAGAG
  M
  CTGTGAGAAG AACCAAGTTC TAGGT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss133371914	ENSMUSSNP19609	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
ss321851975	CHEV_6_89297812	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs48071480					SNP	A	A	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:89324800 () rs orientation: forward

Symbol	Name	Function Class
Gm44207	predicted gene, 44207	1255 bp downstream
Plxna1	plexin A1	Intron
Rr634109	regulatory region 634109	1561 bp distal
Rr634110	regulatory region 634110	65 bp proximal
Rr634111	regulatory region 634111	662 bp proximal
Tssr62006	transcription start site region 62006	762 bp downstream