rs48065981 SNP Detail

Summary

• ID
  rs48065981
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:18907771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAACACATA ACAATGTAAG
  TTTATTAATG CCACTTTACA AGCTGTTTAG CTGCACCAAC ATAAGATACA ACATCCTGCT
  ACCTGAAACT GGGCTCACCA AAGTCAGGGC TTCCAATAGT CAGGTGAGGA GGGCAAGGGG
  CTTACTGCAC CCTACCACTC ACTACATAAC TGTGATAAGC GAAGAGATTC TTGGAGAGGC
  W
  TGAACATAGT ATTCAGTGGT GTTTCTGCCT GGTTCTGATA GTTAAAACCT CTGGATCCCT
  CAGATGACTC TGATTAGACT CTGTGGGAGA CTAATCAAAA CCAAAACCTA CAATTAAGAG
  AAAGATTTAT TGTGTGTGGG ATGGCAGATG AAGGAGTGAC ATGGTAGAAA ATTGGGAGAG
  AAGAACCAGA AAACATAGTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss133043322	ENSMUSSNP2878353	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48065981					SNP	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:18907771 () rs orientation: forward

Symbol	Name	Function Class
Rr626961	regulatory region 626961	369 bp distal