rs48064966 SNP Detail

Summary

• ID
  rs48064966
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:37366005 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TCTAGAGCCT AGGGCAGTCA CCCGAGTCAC CATTTTTTTC
  AGCAATAAGT CAGTGACCCT TTAGCTTTGA GTGGCCTGAG TGGTCTTCTA GAGCCTAGGG
  M
  AGTCACCTGA GTCATCATTT TTTTTTTTTT TTTTCAGCAA GAAGTCAGTG ACCCTTTAGC
  TTTGAGTGGC CTGAGTTGAT GAGCCCCTGG CCATCAGGA                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320709100	CHEV_3_37210778	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs48064966					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:37366005 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Bbs12	Bardet-Biedl syndrome 12			698 bp upstream
Cetn4	centrin 4			Intron
				mRNA-UTR
Cpgi13095	CpG island 13095			164 bp proximal
Gm43439	predicted gene 43439			663 bp upstream
Rr397646	regulatory region 397646			448 bp upstream
Rr575453	regulatory region 575453			within coordinates
Rr575454	regulatory region 575454			554 bp proximal
Rr575455	regulatory region 575455			711 bp proximal
Rr575456	regulatory region 575456			849 bp proximal
Tssr28894	transcription start site region 28894			658 bp upstream
Tssr33051	transcription start site region 33051			562 bp downstream