rs48064312 SNP Detail

Summary

• ID
  rs48064312
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:31510717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CAGTGACCAA GCCAACTCAG TCAGTCAACA GGGTTTCAAG
  GGAGAGAGCG ATGATTAACG TAAGAAAAGA CAATTAGGCA ATATTATAAC ATGACTTCAG
  Y
  CAATGCTGAA GCAGGTTTAT TTTTTTTTTT CCAGTTTGCT TTTATACCAT TCTACAGGTA
  CGTGAAGAGA ATAGGGTTAG TTCTTAGGTC AAAGAGAAA                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	LG/J	SM/J
ss134736268	ENSMUSSNP5742282	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320694309	CHEV_3_31355490	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	LG/J	SM/J
rs48064312					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:31510717 () rs orientation: forward

Symbol	Name	Function Class
Rr374770	regulatory region 374770	976 bp downstream
Rr574911	regulatory region 574911	1445 bp proximal