rs48061895 SNP Detail

Summary

• ID
  rs48061895
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:56489750 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATTGAAAC ATTGTCTCAA
  GGTACGCAAG GCAGGTGTCG GTAAAGCAAA GGTTTGTCAT TGGATACATG GACAAAAATC
  CTACGTTTCC TTACAAAGCA ACCAAGCATT TTAGTGAAAA TGCTATTCAC ACTTTAGCAG
  GCAAACAAAT CAGAGCATGG AAATTCCGCT TAAACGTAGC TGGTGGTGAC CAGGGCACTT
  Y
  ATTATTGAGC AGCTCTCAGA TTCGGTCAGG CCTGCAGATC GTCAACTGGA CTTTCTGATA
  CGTGAATATG GAGGTTAGCT GCACGTGGTG GAAACTCATT TCACTACAAG GCTGTGTGCT
  CTTGCTAGGT CTTTCTACCT ATGCCATATT TACAAGTAGG CTGCTGAATT TTAGAACAGT
  AGTGGTGTGA TTTCAGAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61809892	NES17750296	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48061895					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61809892	NES17750296	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:56489750 () rs orientation: forward

Symbol	Name	Function Class
4933404M09Rik	RIKEN cDNA 4933404M09 gene	1961 bp upstream
Gm24716	predicted gene, 24716	488 bp downstream
Rr480710	regulatory region 480710	926 bp distal
Rr480711	regulatory region 480711	590 bp proximal