rs48052653 SNP Detail

Summary

• ID
  rs48052653
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:150279625 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                      T CCCGTATCTC TCTCCTTCTT AGCATGGGAA ACGTTTTTGT
  TGAAACGTGA ACATATCAGA CAGTATGTGC AAGCAGTTCT GATTCTGATC TTCTAAAACC
  A
  TGCTGTGGCG TTTTCTGATG TGTCTATTTG TGGGCTTGTT TAGGTGTTCG CCCGTGTTTA
  ACCTGCAGAA TGTGCCTCCG TGGCAGCACA GAGCAGTTAA T                    
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss148049947	ENSMUSSNP6809483	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs48052653					SNP	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:150279625 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Car6	carbonic anhydrase 6			Intron
				Noncoding-Transcript-Variant
Rr605219	regulatory region 605219			949 bp distal
Rr605220	regulatory region 605220			1035 bp distal
Tssr40386	transcription start site region 40386			926 bp upstream
Tssr44728	transcription start site region 44728			1393 bp upstream
Tssr44729	transcription start site region 44729			911 bp downstream
Tssr44730	transcription start site region 44730			941 bp downstream
Tssr44731	transcription start site region 44731			974 bp downstream