rs48051562 SNP Detail

Summary

• ID
  rs48051562
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:141747641 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGCAAAAAA GACGCATAAG
  TTACATTTGA GTATTTACCA ATGAAGTTCA TAGAAGTCAC CACGGTAGCT TAGTTTTTCA
  TTCTAAGACT AGTAAGTCGC ATTTCATGGG CTGGACTATG AAGTTACTTC TTATTCAAAT
  AAAGGCGTAT TAAGGAACCA CCCAGAGATA AAGCCTTGTC TTCTTGAACT CATTTGCTAT
  R
  TATACAGTGA ATAAGAGTAT GCTCTATAAA CAGCAGAGAT TATACTATAT ACTGTAACTG
  AGCTGAAAGT CTCCCTTGGG CACAGCGATG CATAAATGAT TGTCACAGCT ATCTCGCTAG
  TTCAGATCCT GCAATCTTAT AACCAACTTC TGAAGGACAA AAATGATACT TTGGCTAAGA
  AAACAGTAAC CAACCATTTA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss61089247	NES16604373	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G		A	G	A	A		G
ss320997877	CHEV_3_141704844	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs48051562					SNP	G	G	G	G	G	G	A	G	G	G	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61089247	NES16604373	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:141747641 () rs orientation: forward

Symbol	Name	Function Class
Bmpr1b	bone morphogenetic protein receptor, type 1B	Intron
Rr586379	regulatory region 586379	1688 bp proximal