rs48050539 SNP Detail

Summary

• ID
  rs48050539
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:147511457 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAGGGTCCT GCCTGGCACT TCTGTAGGTC AGAGGACAAC
  TCTAAGGTAT AGATTCTCCT CCTTCCACCT TGTGAGATCC ACAGATCAAA CTCAGATTGC
  C
  AGTCCTGTGA TTGTTTGCCT CTACTGGCTG AGTTATCTCA AGACTCGAAA ATGATTTTTC
  TATTTAAGTA TTTCTATTAA ATTTTTTATC TTTTAATTA                       
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J
ss147959117	ENSMUSSNP1350827	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J
rs48050539					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:147511457 () rs orientation: forward

Symbol	Name	Function Class
Rr398813	regulatory region 398813	861 bp upstream
Rr398814	regulatory region 398814	1770 bp upstream
Rr604485	regulatory region 604485	781 bp distal
Rr604486	regulatory region 604486	867 bp distal