rs48047892 SNP Detail

Summary

• ID
  rs48047892
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:24790587 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGGA AAGTTCAGGT GAGGGCGAGC
  R
  CACATAACTG CATGTGTTCT GATAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
ss61262560	NES16880297	PERLEGEN	MM_PANEL2	f	SNP	G	A	G	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	DBA/2J	MOLF/EiJ	PWD/PhJ
rs48047892					SNP	G	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61262560	NES16880297	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:24790587 () rs orientation: forward

Symbol	Name	Function Class
Arg1	arginase, liver	518 bp downstream
Med23	mediator complex subunit 23	1229 bp downstream
Tssr92746	transcription start site region 92746	931 bp upstream
Tssr92747	transcription start site region 92747	1004 bp upstream
Tssr97085	transcription start site region 97085	803 bp downstream
Tssr97086	transcription start site region 97086	849 bp downstream
Tssr97087	transcription start site region 97087	883 bp downstream
Tssr97088	transcription start site region 97088	941 bp downstream
Tssr97089	transcription start site region 97089	960 bp downstream
Tssr97090	transcription start site region 97090	991 bp downstream
Tssr97091	transcription start site region 97091	1382 bp downstream
Tssr97092	transcription start site region 97092	1402 bp downstream
Tssr97093	transcription start site region 97093	1426 bp downstream
Tssr97094	transcription start site region 97094	1442 bp downstream
Tssr97095	transcription start site region 97095	1456 bp downstream
Tssr97096	transcription start site region 97096	1721 bp downstream
Tssr97097	transcription start site region 97097	1995 bp downstream