rs48047105 SNP Detail

Summary

• ID
  rs48047105
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:87664895 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGG AGAACTCAAC ACCCCAGGCC
  Y
  CTCTGCACGT GGCCCTGGAT TCTGC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss135468149	ENSMUSSNP1164948	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T		C
ss320835382	CHEV_3_87561510	CHEVERUD	SCREENING_POP	f	SNP			T		T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs48047105					SNP	T	T	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:87664895 () rs orientation: forward

Symbol	Name	Function Class
Pear1	platelet endothelial aggregation receptor 1	Intron
Rr579538	regulatory region 579538	1447 bp distal